2022 |2021 | 2020 | 2019 | 2018 | 2017
- Diya Li, Mohammed J. Zaki, Ching-hua Che; Health-guided recipe recommendation over knowledge graphs,
Journal of Web Semantics,2022,100743,ISSN 1570-8268,https://doi.org/10.1016/j.websem.2022.100743. - Jonathan J. Harris and Mohammed J. Zaki. Towards neural numeric-to-text generation from temporal personal health data. In Workshop on Applied Data Science for Healthcare: Transparent and Human-centered AI (with KDD). Aug 2022.
- Zhang, O., Chari, S., Saiz, F. S., Gruen, D. M., Acharya, P., Seneviratne, O., Meyer, P., McGuinness, D. L, Chakraborty, P.; “Understanding Clinician Workflows to Design AI Risk Prediction Models”; AMIA Inf. Summ., Apr 2022. (Poster)
- JAMIA Open
- M. Qi, O. Cahan, M. A. Foreman, D. M. Gruen, A. K. Das, and K. P. Bennett (2021). “Quantifying Representativeness in Randomized Clinical Trials Using Machine Learning Fairness Metrics,” JAMIA Open.
- International Semantic Web Conference
- Sola S. Shirai, Oshani Seneviratne, Ching-Hua Chen, Daniel M. Gruen, and Deborah L. McGuinness. Healthy Food Recommendation and Explanation Generation using a Semantically-Enabled Framework; ISWC 2021 (Poster)
- AMIA
- Manan Shukla, Jianjin Lin, and Oshani Seneviratne, “BlockIoT: Blockchain-based Health Data Integration using IoT Devices,” AMIA Symp. 2021.
- M. Qi, A. K. Das, and K. P. Bennett (2021). “Planning Equitable Clinical Trial Enrollment using Integer Programming,” American Medical Informatics Association (AMIA) Annual Conference 2021 (Podium Abstract).
- S Chari, P Chakraborty, O Seneviratne, M Ghalwash, DM Gruen, D Sow, DL McGuinness; “Towards Clinically Relevant Explanations for Type-2 Diabetes Risk Prediction with the Explanation Ontology”; AMIA Symp. 2021 (Poster)
- Jonathan Harris, Deborah L. McGuinness, Marco Monti, Oshani Seneviratne, Mohammed J. Zaki, Ching-Hua Chen. "Enhancing Clinical Relevance of Health Behavior Insights via Semantics"; AMIA Symp. 2021 (Poster)
- MCBK
- S Chari, O Zhang, P Acharya, FS Saiz, M Ghalwash, EK Eyigoz, O Seneviratne, DM Gruen, PM Rojas, P Chakraborty, DL McGuinness; “Towards Providing Clinical Context for a Diabetes Risk-Prediction Use Case via User-centered Explainability”; MCBK Symp., Jul 2021
- ACM SIGKDD
- S Chari, P Chakraborty, M Ghalwash, O Seneviratne, DM Gruen, FS Saiz, CH Chen, PM Rojas, DL McGuinness; “Leveraging Clinical Context for User-Centered Explainability: A Diabetes Use Case”; KDD Applied Data Science in Healthcare (DSHealth) Workshop; 2021
- ACM Transactions on Computing for Healthcare
- A Framework for Generating Summaries from Temporal Personal Health Data; Jonathan Harris, Ching-Hua Chen, Mohammed J. Zaki
- Journal - Frontiers in Artificial Intelligence, section AI in Food, Agriculture and Water
- Ingredient Substitutions Using a Knowledge Graph of Food; Sola S. Shirai, Oshani Seneviratne, Minor E. Gordon, Ching-Hua Chen, Deborah L. McGuinness; Frontiers in Artificial Intelligence, section AI in Food, Agriculture and Water
- Web Search and Data Mining
- Personalized Food Recommendation as Constrained Question Answering over a Large-scale Food Knowledge Graph; Yu Chen, Ananya Subburathinam, Ching-Hua Chen, and Mohammed J. Zaki; The 14th ACM International Conference on Web Search and Data Mining 2021
- AAAI 2021 Workshop: Trustworthy AI for Healthcare
- Designing for AI Explainability in Clinical Context; Daniel M. Gruen, Shruthi Chari, Morgan A. Foreman, Oshani Seneviratne, Rachel Richesson, Amar K. Das, Deborah L. McGuinness, AAAI 2021 Workshop: Trustworthy AI for Healthcare
- Data Engineering Meets intelligent food and Cooking Recipes (DECOR) Workshop
- Semantic Modeling for Food Recommendation Explanations; Ishita Padhiar, Oshani Seneviratne, Shruthi Chari, Dan Gruen, and Deborah McGuinness (Best Student Paper Award)
- Nutrition Guided Recipe Search via Pre-trained Recipe Embeddings, Diya Li, Mohammed J. Zaki, and Ching-hua Chen
- Neural Information Processing Systems (NeurIPS)
- International Semantic Web Conference (ISWC)
- Explanation Ontology: A Model of Explanations for User-Centered AI; Shruthi Chari , Oshani Seneviratne , Daniel M. Gruen , Morgan A. Foreman , Amar K. Das, Deborah L. McGuinness; Resource Track,19th International Semantic Web Conference 2020 (Best Resource Paper Award)
- Explanation Ontology in Action: A Clinical Use-Case; Shruthi Chari , Oshani Seneviratne , Daniel M. Gruen , Morgan A. Foreman , Amar K. Das, Deborah L. McGuinness; Posters and Demo Track,19th International Semantic Web Conference 2020
- Applying Learning and Semantics for Personalized Food Recommendations; Nidhi Rastogi, Oshani Seneviratne, Yu Chen, Jon Harris, Diya Li, Ananya Subburathinam, Ruisi Jian, Megan Goulet, Yuheng Zhou, Osama Minhas, Jared Okun, Aaron Hill, Ching-Hua Chen, Dan Gruen; Posters and Demo Track,19th International Semantic Web Conference 2020
- Semantics-Driven Ingredient Substitution in the FoodKG; Sola Shirai, Oshani Seneviratne, Minor Gordon, Ching-Hua Chen, Deborah McGuinness; Posters and Demo Track,19th International Semantic Web Conference 2020
- Employing Hybrid Reasoning to Support Clinical Decision-Making, Sabbir Rashid, Doctoral Consortium, 19th International Semantic Web Conference 2020
- American Medical Informatics Association (AMIA) Annual Conference
- Knowledge Extraction of Cohort Characteristics in Research Publications; Jay D. S. Franklin, Shruthi Chari, Morgan A. Foreman, Oshani Seneviratne, Daniel M. Gruen, James P. McCusker , Amar K. Das, Deborah L. McGuinness; American Medical Informatics Association (AMIA) Annual Conference 2020 (Regular paper)
- Visualizing Inequities in Clinical Trials using ML Fairness Metrics; Miao Qi, Owen Cahan, Morgan A. Foreman, Daniel M. Gruen, Amar K. Das, and Kristin P. Bennett; American Medical Informatics Association (AMIA) Annual Conference 2020 (Podium Abstract)
- Combining User Preferences and Health Needs in Personalized Food Recommendation; Yu Chen, Mohammed J. Zaki, and Ching-Hua Chen; American Medical Informatics Association (AMIA) Annual Conference 2020 (Podium Abstract)
- Knowledge Discovery and Data mining (KDD) Conference
- Reciptor: An Effective Pretrained Model for Recipe Representation Learning, Diya Li and Mohammed J. Zaki,
ACM Special Interest Group on Knowledge Discovery and Data Mining Conference(SIGKDD 2020)
- Reciptor: An Effective Pretrained Model for Recipe Representation Learning, Diya Li and Mohammed J. Zaki,
- International Joint Conference on Artificial Intelligence (IJCAI)
- GraphFlow: Exploiting Conversation Flow with Graph Neural Networks for Conversational Machine Comprehension;Yu Chen , Lingfei Wu and Mohammed J. Zaki 29th International Joint Conference on Artificial Intelligence (IJCAI 2020), Yokohama, Japan, Jul 11-17, 2020.
- International Conference on Learning Representations (ICLR)
- Reinforcement learning based graph-to-sequence model for natural question generation;
Yu Chen , Lingfei Wu and Mohammed J. Zaki ;
8th International Conference on Learning Representations (ICLR) 2020
- Reinforcement learning based graph-to-sequence model for natural question generation;
- Association for the Advancement of Artificial Intelligence (AAAI)
- Deep Iterative and Adaptive Learning for Graph Neural Networks; (Best student paper)
Yu Chen , Lingfei Wu and Mohammed J. Zaki;
AAAI 2020 Workshop on Deep Learning on Graphs: Methodologies and Applications (AAAI DLGMA) 2020
- Deep Iterative and Adaptive Learning for Graph Neural Networks; (Best student paper)
- American Medical Informatics Association (AMIA) Informatics Summit
- Knowledge Extraction of Cohort Characteristics in Research Publications; Jay D. S. Franklin , Shruthi Chari , Morgan A. Foreman , Oshani Seneviratne , Daniel M. Gruen , James P. McCusker , Amar K. Das , Deborah L. McGuinness ;
American Medical Informatics Association (AMIA) Informatics Summit 2020
- Knowledge Extraction of Cohort Characteristics in Research Publications; Jay D. S. Franklin , Shruthi Chari , Morgan A. Foreman , Oshani Seneviratne , Daniel M. Gruen , James P. McCusker , Amar K. Das , Deborah L. McGuinness ;
- Personal Health Knowledge Graph Workshop at the Knowledge Graph Conference
- A Survey on Personal Health Knowledge Graphs. Sola S. Shirai, Oshani Seneviratne, Deborah L. McGuinness. Workshop on The Personal Health Knowledge Graph, KGC, 2020
- Personal Health Knowledge Graphs for Patients. Nidhi Rastogi and Mohammed J. Zaki. Workshop on The Personal Health Knowledge Graph, KGC, 2020
- Aligning Diverse Data for a Personalized Health Knowledge Graph. Matthew Johnson, Meenu Ravi, Sabbir Rashid, Paulo Pinheiro and Deborah McGuinness. Workshop on The Personal Health Knowledge Graph, KGC, 2020
- Book Chapters
- Foundations of Explainable Knowledge-Enabled Systems, Shruthi Chari, Daniel M. Gruen, Oshani Seneviratne, Deborah L. McGuinness. In: Ilaria Tiddi, Freddy Lecue, Pascal Hitzler (eds.), Knowledge Graphs for eXplainable AI -- Foundations, Applications and Challenges. Studies on the Semantic Web, IOS Press, Amsterdam, 2020
- Directions for Explainable Knowledge-Enabled Systems, Shruthi Chari, Daniel M. Gruen, Oshani Seneviratne, Deborah L. McGuinness. In: Ilaria Tiddi, Freddy Lecue, Pascal Hitzler (eds.), Knowledge Graphs for eXplainable AI -- Foundations, Applications and Challenges. Studies on the Semantic Web, IOS Press, Amsterdam, 2020
- Journal Papers
- The Semantic Data Dictionary–An Approach for Describing and Annotating Data; Rashid, Sabbir M., James P. McCusker, Paulo Pinheiro, Marcello P. Bax, Henrique Santos, Jeanette A. Stingone, Amar K. Das, and Deborah L. McGuinness. " Data Intelligence (2020): 443-486.
- Natural Question Generation with Reinforcement Learning Based Graph-to-Sequence Model;
Yu Chen , Lingfei Wu and Mohammed J. Zaki;
NeurIPS 2019 Workshop on Graph Representation Learning(NeurIPS GRL) 2019 - FoodKG Enabled Q&A Application;
Steven Haussmann, Yu Chen , Oshani Seneviratne , Nidhi Rastogi, James Codella, Ching-Hua Chen, Deborah L. McGuinness , Mohammed J. Zaki;
18th International Semantic Web Conference (ISWC) 2019 - FoodKG: A Semantics-Driven Knowledge Graph for Food Recommendation.;
Steven Haussmann, Oshani Seneviratne , Yu Chen , Yarden Ne’eman, James Codella, Ching-Hua Chen, Deborah L. McGuinness and Mohammed J. Zaki;
8th International Semantic Web Conference (ISWC) 2019 - GraphFlow: Exploiting Conversation Flow with Graph Neural Networks for Conversational Machine Comprehension;
Yu Chen , Lingfei Wu and Mohammed J. Zaki;
ICML 2019 Workshop on Learning and Reasoning with Graph-Structured Representations (ICML LRG) 2019 - Bidirectional Attentive Memory Networks for Question Answering over Knowledge Bases;
Yu Chen , Lingfei Wu and Mohammed J. Zaki;
2019 Annual Conference of the North American Chapter of the Association for Computational Linguistics (NAACL-HLT) 2019 - Making Study Populations Visible through Knowledge Graphs; (Best resource paper nominee)
Shruthi Chari , Miao Qi, Nkecheniyere N. Agu, Oshani Seneviratne , James P. McCusker , Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness ;
8th International Semantic Web Conference 2019 - Representing Study Populations in Scientific Literature in Knowledge Graphs;
Shruthi Chari , Miao Qi, Nkecheniyere N. Agu, Oshani Seneviratne , James P. McCusker , Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness ;
Scientific Literature Knowledge Base (SLKB) Workshop at Automatic Knowledge Base Construction (AKBC) 2019 - Ontology-enabled Analysis of Study Populations;
Shruthi Chari , Miao Qi, Nkecheniyere N. Agu, Oshani Seneviratne , James P. McCusker , Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness ;
18th International Semantic Web Conference 2019 - Patient Knowledge Representation and Reasoning - An Unexpected Outcome Use Case;
Sabbir M. Rashid, Morgan A. Foreman, Daniel M. Gruen, Oshani Seneviratne , James P. McCusker, Amar K. Das and Deborah L. McGuinness ;
2nd Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2019 - FoodKG: A Semantics-Driven Knowledge Graph for Food Recommendation;
Steven Haussmann, Oshani Seneviratne , Yu Chen , James Codella, Ching-Hua Chen, Deborah L. McGuinness and Mohammed J. Zaki;
2nd Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2019 - Semantically-targeted Analytics for Reproducible Scientific Discovery;
Alexander New, Shruthi Chari ,Miao Qi,Sabbir M. Rashid, John S. Erickson,Deborah L. McGuinness ,Kristin P. Bennett;
AIDR 2019: Artificial Intelligence for Data Discovery and Reuse 2019 - Automating Population Health Studies through Semantics and Statistics;
Alexander New, Miao Qi, Shruthi Chari ,Sabbir M. Rashid, Oshani Seneviratne , James P. McCusker , John S. Erickson,Deborah L. McGuinness ,Kristin P. Bennett;
SemStats workshop at 18th International Semantic Web Conference 2019 - An Automated Semantalytic Approach for Precision Population Health Studies;
Alexander New, Miao Qi, Shruthi Chari ,Sabbir M. Rashid, John S. Erickson,Deborah L. McGuinness ,Kristin P. Bennett;
New England Computational Health Summit (NECHS) 2019 - A Linked Data Representation for Summary Statistics and Grouping Criteria;
James P. McCusker , Michel Dumontier, Shruthi Chari , Joanne Luciano and Deborah L. McGuinness ;
SemStats workshop at 18th International Semantic Web Conference 2019 - Enabling Trust in Clinical Decision Support Recommendations through Semantics;
Oshani Seneviratne , Amar K. Das , Shruthi Chari , Nkecheniyere N. Agu, Sabbir M. Rashid, Ching-Hua Chen, James P. McCusker , James A. Hendler, and Deborah L. McGuinness ;
Semantic Web solutions for large-scale biomedical data analytics 2019 workshop at 18th International Semantic Web Conference 2019 - G-PROV: Provenance Management for Clinical Practice Guidelines;
Nkecheniyere N. Agu, Neha Keshan, Shruthi Chari , Oshani Seneviratne , Sabbir M. Rashid, Amar K. Das , James P. McCusker , and Deborah L. McGuinness ;
Semantic Web solutions for large-scale biomedical data analytics 2019 workshop at 18th International Semantic Web Conference 2019 - A Precision Environment-Wide Association Study of Hypertension via Supervised Cadre Models;
Alexander New, Kristin P. Bennett;
IEEE journal of biomedical and health informatics, 2019
- Cadre modeling: Simultaneously discovering subpopulations and predictive models;
Alexander New and Breneman, Curt and Kristin P. Bennett;
2018 International Joint Conference on Neural Networks (IJCNN) p. 1--8. 2018
Knowledge Integration for Disease Characterization: A Breast Cancer Example;
Oshani Seneviratne and Sabbir M. Rashid and Shruthi Chari and James P. McCusker and Kristin P. Bennett and James A. Hendler and Deborah L. McGuinness;
International Semantic Web Conference p. 223--238. 2018 - Ontology-enabled Breast Cancer Characterization.;
Oshani Seneviratne and Sabbir M. Rashid and Shruthi Chari and McCusker, Jim and Kristin P. Bennett and James A. Hendler and Deborah L. McGuinness;
International Semantic Web Conference (P&D/Industry/BlueSky) 2018 - The Whyis Knowledge Graph Framework in Action.;
McCusker, Jim and Sabbir M. Rashid and Nkecheniyere N. Agu and Kristin P. Bennett and Deborah L. McGuinness;
International Semantic Web Conference (P&D/Industry/BlueSky) 2018 - Developing Scientific Knowledge Graphs Using Whyis.;
McCusker, Jim and Sabbir M. Rashid and Nkecheniyere N. Agu and Kristin P. Bennett and Deborah L. McGuinness;
SemSci@ ISWC p. 52--58. 2018 - G-PROV: A Provenance Encoding Structure for Guideline Evidence;
Shirly Stephen, Oshani Seneviratne , Deborah L. McGuinness , Shruthi Chari and Amar K. Das;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018 - Semantic Modeling of Cohort Descriptions in Research Studies;
Shruthi Chari , Rukmal Weerawarana, Oshani Seneviratne , James P. McCusker , Deborah L. McGuinness and Amar K. Das;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018 - Using semantics and analytics to drive dynamic health risk analyses;
Alexander New, Sabbir M. Rashid, John S. Erickson, Deborah L. McGuinness and Kristin P. Bennett;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018 - Improving Identified Comorbidities using Semantically Annotated Disease Graph;
Nkecheniyere N. Agu, Oshani Seneviratne and Deborah L. McGuinness ;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018 - Whyis Knowledge Graph Framework;
James P. McCusker and Deborah L. McGuinness ;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018 - Knowledge Representation and Reasoning for Breast Cancer;
Oshani Seneviratne , Sabbir M. Rashid, Shruthi Chari , James P. McCusker, Kristin P. Bennett, James A. Hendler and Deborah L. McGuinness ;
Annual AMIA Knowledge Representation and Semantics Pre-Symposium 2018
2017
- Cognitive Computing, M Sridharan, G Tesauro, James A. Hendler, IEEE Intelligent Systems, 32(4), 2017